The Nub of the Oncotherapy Problem..and resistance to decitabine or 5-azacytidine

Published in Cancer
The Nub of the Oncotherapy Problem..and resistance to decitabine or 5-azacytidine
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The nub of the matter in oncotherapy is therapeutic index: the need to terminate malignant, but somehow not its close-cousin normal, self-replication. A famous solution is to drug proteins unique to malignant cells, the index example being imatinib to inhibit BCR-ABL in chronic phase chronic myeloid leukemia. Few cancers, however, offer such oncoprotein/drug pairs, and in fewer is the interdicted oncoprotein linchpin enough for durable response. The dream is to have universal targets - to merrily engage genetics be damned - confident that bad but not good will be terminated. Breaking news! We have such targets! But their validation has been gradual and decades-long, by accident/serendipity more than brilliance, obscuring notice by a scientific-industrial complex tuned for dramatically novel story-lines. These targets are corepressors, e.g., DNA methyltransferase 1 (DNMT1), proteins that mediate gene repression as opposed to activation, and recruited in unbalanced fashion into lineage master transcription factor hubs in self-replicating malignant cells. The science behind this is summarized in the Supplementary Discussion of this publication [1] and has been reviewed in detail [2]. The value of these targets is especially apparent when treating myeloid malignancies in the elderly: suppressing malignant clones is only half the battle, the other half is that functional hematopoiesis, already diminished by age and disease processes, must recover - it is no coincidence that DNMT1-depleting drugs decitabine and 5-azacytidine are the only agents approved to treat all genetic/histological sub-types of myelodysplastic syndromes (MDS), and are also backbone drugs to treat acute myeloid leukemia (AML). But clinical responses occur in only ~40% of MDS/AML patients, and relapses are routine. Wait a minute, didn’t we just assert genetics agnostic target validity? Wherefore, therefore, refractory disease/relapse? We wondered the same thing, after observing relapses following initial gratifying responses, to decitabine administered by doses and schedules carefully rationalized to engage DNMT1 without off-target cytotoxicity [3, 4]. We found that MDS/AML resistance was not by selection for genetically mutated sub-clones, but organic/physiologic, an automatic, adaptive response of the pyrimidine metabolism network to drug-induced nucleotide perturbations. Metabolic configurations in histologies other than myeloid are naturally less conducive to decitabine/5-azacytidine processing into DNMT1-depleting nucleotide, suggesting a need for counter-measures, as described [1], from the get go. These discoveries suggest concrete practical steps to widen and extend responses, but also reinforce DNMT1 target-validity – resistance is by evading DNMT1 target-engagement. The practice of oncology requires humility. This can shade to nihilism - “Nobody knows how decitabine or 5-azacytidine or Drug X really works” - bred of the complexity of pharmacology let alone biology, routine failure, dogma and the separate siloes clinicians, scientists, and pharma executives inhabit. Convention, abetted by this strain, excuses more-is-better, empiric, toxic (but often futile) application of oncotherapeutics. Thus, our pick of the take-aways is this: DNMT1 and other specific corepressors (e.g., SMARCA5, CHD4), aberrantly enriched in lineage master transcription factor hubs in self-replicating malignant cells, are the Holy Grail (Excellent Therapeutic Index) targets for therapy we have all been waiting for, let’s engage😊       

1. Gu X, Tohme R, Tomlinson B, Sakre N, Hasipek M, Durkin L, et al. Decitabine- and 5-azacytidine resistance emerges from adaptiveresponses of the pyrimidine metabolism network. Leukemia in press.

2. Velcheti V, Schrump D, Saunthararajah Y. Ultimate Precision: Targeting Cancer but Not Normal Self-replication. American Society of Clinical Oncology educational book American Society of Clinical Oncology Annual Meeting 2018 May 23; (38): 950-963.

3. Saunthararajah Y, Sekeres M, Advani A, Mahfouz R, Durkin L, Radivoyevitch T, et al. Evaluation of noncytotoxic DNMT1-depleting therapy in patients with myelodysplastic syndromes. J Clin Invest 2015 Mar 2; 125(3): 1043-1055.

4.         Awada H, Mahfouz RZ, Kishtagari A, Kuzmanovic T, Durrani J, Kerr CM, et al. Extended experience with a non-cytotoxic DNMT1-targeting regimen of decitabine to treat myeloid malignancies. Br J Haematol 2019 Nov 17.

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Cancer Biology
Life Sciences > Biological Sciences > Cancer Biology
  • Leukemia Leukemia

    This journal publishes high quality, peer reviewed research that covers all aspects of the research and treatment of leukemia and allied diseases. Topics of interest include oncogenes, growth factors, stem cells, leukemia genomics, cell cycle, signal transduction and molecular targets for therapy.